Package: abn 3.1.13

abn: Modelling Multivariate Data with Additive Bayesian Networks
The 'abn' R package facilitates Bayesian network analysis, a probabilistic graphical model that derives from empirical data a directed acyclic graph (DAG). This DAG describes the dependency structure between random variables. The R package 'abn' provides routines to help determine optimal Bayesian network models for a given data set. These models are used to identify statistical dependencies in messy, complex data. Their additive formulation is equivalent to multivariate generalised linear modelling, including mixed models with independent and identically distributed (iid) random effects. The core functionality of the 'abn' package revolves around model selection, also known as structure discovery. It supports both exact and heuristic structure learning algorithms and does not restrict the data distribution of parent-child combinations, providing flexibility in model creation and analysis. The 'abn' package uses Laplace approximations for metric estimation and includes wrappers to the 'INLA' package. It also employs 'JAGS' for data simulation purposes. For more resources and information, visit the 'abn' website.
Authors:
abn_3.1.13.tar.gz
abn_3.1.13.zip(r-4.7)abn_3.1.13.zip(r-4.6)abn_3.1.13.zip(r-4.5)
abn_3.1.13.tgz(r-4.6-x86_64)abn_3.1.13.tgz(r-4.6-arm64)abn_3.1.13.tgz(r-4.5-x86_64)abn_3.1.13.tgz(r-4.5-arm64)
abn_3.1.13.tar.gz(r-4.7-arm64)abn_3.1.13.tar.gz(r-4.7-x86_64)abn_3.1.13.tar.gz(r-4.6-arm64)abn_3.1.13.tar.gz(r-4.6-x86_64)
abn_3.1.13.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
abn/json (API)
| # Install 'abn' in R: |
| install.packages('abn', repos = c('https://furrer-lab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/furrer-lab/abn/issues
Pkgdown/docs site:https://r-bayesian-networks.org
- gsl– GNU Scientific Library (GSL)
- openblas– Optimized BLAS
- c++– GNU Standard C++ Library v3
- openmp– GCC OpenMP (GOMP) support library
- jags– Just Another Gibbs Sampler for Bayesian MCMC - binary JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. JAGS was written with three aims in mind: * To have an engine for the BUGS language that runs on Unix * To be extensible, allowing users to write their own functions, distributions and samplers. * To be a plaftorm for experimentation with ideas in Bayesian modelling This package contains the 'jags' binary as well as the associated shared library modules loaded by the binary.
bayesian-networkbinomialcategorical-datagaussiangrouped-datasetsmixed-effectsmultinomialmultivariatepoissonstructure-learninggslopenblascppopenmpjags
Last updated from:4e11bf4cea. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 791 | ||
| linux-devel-x86_64 | OK | 843 | ||
| source / vignettes | OK | 416 | ||
| linux-release-arm64 | OK | 756 | ||
| linux-release-x86_64 | OK | 791 | ||
| macos-release-arm64 | OK | 548 | ||
| macos-release-x86_64 | OK | 1176 | ||
| macos-oldrel-arm64 | OK | 599 | ||
| macos-oldrel-x86_64 | OK | 1307 | ||
| windows-devel | OK | 447 | ||
| windows-release | OK | 365 | ||
| windows-oldrel | OK | 346 | ||
| wasm-release | OK | 213 |
Exports:abn.versionAIC.abnFitas.data.frame.abnDagbern_bugsbern_bugsGroupBIC.abnFitbuild.controlbuildcachematrixbuildScoreCachebuildScoreCache.bayesbuildScoreCache.mlecalc.node.inla.glmcalc.node.inla.glmmcategorical_bugscategorical_bugsGroupcheck.valid.buildControlscheck.valid.dagcheck.valid.datacheck.valid.fitControlscheck.valid.groupscheck.valid.parentscheck.which.valid.nodescheckforcyclescoef.abnFitcompareDagcompareEGcreateAbnDagdiscretizationentropyDataessentialGrapheval.across.gridexpitexpit_cppexport_abnFitexport_abnFit_bayesexport_abnFit_mleexport_abnFit_mle_arcsexport_abnFit_mle_grouped_nodesexport_abnFit_mle_nodesexport_to_jsonextract_parameters_by_distributionextract_parameters_mixed_effectsextract_states_from_datafamily.abnFitfind.next.left.xfind.next.right.xfit_single_nodefit.controlfitAbnfitabn_marginalsfitAbn.bayesfitAbn.mleforLoopContentforLoopContentBayesforLoopContentFitBayesformula_abngauss_bugsgauss_bugsGroupget_link_functionget.ind.quantilesget.quantilesget.var.typesgetmarginalsgetMargsINLAgetModeVectorgetMSEfromModesinfoDagirls_binomial_cpp_fastirls_binomial_cpp_fast_brirls_gaussian_cpp_fastirls_poisson_cpp_fastlinkStrengthlogitlogit_cpplogLik.abnFitmakebugsmakebugsGroupmbmi_cppmiDatamodes2coefsmostProbablemostprobable_Cnobs.abnFitoddsorplot.abnDagplot.abnFitplot.abnHeuristicplot.abnHillClimberplot.abnMostprobableplotAbnpois_bugspois_bugsGroupprint.abnCacheprint.abnDagprint.abnFitprint.abnHeuristicprint.abnHillClimberprint.abnMostprobablerank_cppregressionLoopscoreContributionsearchHeuristicsearchhillsearchHillClimbersimulateAbnsimulateDagskewnessstd.area.under.gridstrsplitssummary.abnDagsummary.abnFitsummary.abnMostprobabletidy.cachetoGraphvizvalidate_dists
Dependencies:backportsBiocGenericsbootbroomclicodacodetoolscolorspacecowplotcpp11data.tableDerivdoBydoParalleldplyrfarverforeachforecastfracdiffgenericsggplot2glmmTMBgluegraphgtableisobanditeratorsjsonlitelabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixmclogitmemiscmgcvmicrobenchmarkminqamodelrnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpurrrR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasRgraphvizrjagsrlangS7sandwichscalesstringistringrtibbletidyrtidyselecttimeDateTMBurcautf8vctrsviridisLitewithryamlzoo
Bayesian Network Structure Learning
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Data Simulation
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Mixed-effect Bayesian Network Model
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Model Specification: Build a Cache of Scores
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Parallelisation
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Parameter Learning
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Quick Start Example
Rendered fromquick_start_example.Rmdusingknitr::rmarkdownon May 22 2026.Last update: 2024-03-15
Started: 2024-03-15
